Yeah, I am not a fan of the comics and as such it does not bother me, but if I were I can totally see how it would.
That aside, I'm not going to claim the movie is perfect or anything (it's definitely not), but all the other "flaws" people have pointed out just don't phase me. It's not that I can refute them or anything, it's just that I don't care about them and can't really see why someone would.